Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CRC rs2891019 chr7:62052098 A/C 7.11E-7 368 23.83 20.05 11.27 KM Plot
CRC rs3011227 chr1:44325409 G/A 5.17E-5 372 16.47 22.2 23.05 KM Plot
CRC rs3058755 chr12:59968653 A/AAAAT 1.04E-5 374 10.4 18.13 24.77 KM Plot
CRC rs3106580 chr12:59966600 C/T 1.19E-5 372 24.85 17.73 10.4 KM Plot
CRC rs3127079 chr10:115503970 C/A 6.63E-5 367 23.37 21.53 12.17 KM Plot
CRC rs34007391 chr19:42081453 T/C 3.04E-7 366 22.83 19.6 13.35 KM Plot
CRC rs34063578 chr7:62080698 T/C 5.74E-6 369 24.33 20.23 14.37 KM Plot
CRC rs34104612 chr7:62092090 A/C 6.75E-6 369 24.33 19.87 14.37 KM Plot
CRC rs34208362 chr7:62054099 T/C 8.65E-7 365 23.37 20.23 11.27 KM Plot
CRC rs34296142 chr7:61992025 T/C 7.43E-7 364 22.53 20.3 11.27 KM Plot
CRC rs34354162 chr7:62041895 C/G 7.41E-7 367 23.83 20.23 11.27 KM Plot
CRC rs34382824 chr7:57829252 C/G 1.29E-5 373 23.6 20.3 11.92 KM Plot
CRC rs34424659 chr7:62060074 C/A 8.87E-7 364 23.37 20.27 11.27 KM Plot
CRC rs34576160 chr6:151708547 G/A 6.83E-5 373 22.78 20.7 12.97 KM Plot
CRC rs34581467 chr7:57814649 T/G 1.47E-6 371 23.07 20.7 11.92 KM Plot